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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015846310.1_cds_XP_016509593.1_22514
CDS Infomation

[gene=LOC107827049] [db_xref=GeneID:107827049] [protein=exocyst complex component SEC10-like] [partial=5'] [protein_id=XP_016509593.1] [location=complement(join(14361..14439,14757..14840,14927..15025,17617..17675,19160..19244,19547..19644,19838..19984,20094..20186,20302..20430,20633..20686,21747..21920,22523..22608,24752..24842,24940..25038,25367..25443,25528..25693,25983..26074,26720..>26825))] [gbkey=CDS]
Sequence

ACACATAGTACTGTAGTTTANCCCCCCACACACACACACACACTCACACTCTCCACTAAT
CTGATATTGCTTCTGGTGAATGCTGCCTGCACAGTAGCTCGACCAGAGTTGGAAAACAGA
TTACTAGCTCGATTTGATGCGGCTTCACAGAAGCGGGAGTTGTCTACAATGCGGGAATGT
GCTAAAATTTTGTCGCAGTTTAATAGGGGTACCAGTGCTATGCAACACTATGTGGGATTA
TGTCCAATGTTCGATGTGGAGGTCATGAATGCAGATGCTGAATTGGTTCTTGGAGATCAG
GGTGCCCAGCCCAGCCCTAGCAATGTCGCGCGTGGTCTTTCTTCAATTTTTAAAGAGATT
ACAGAGACTGTGCGGAAAGAAGCAGCCACTATTGCAGCCGTTTTTCCTTCCCCAAACGAT
GTAATGTCAATACTGGTTCAGCGTGTTTTGGAGGATCGTGTTCCAAAGCTTCTTGAGAAG
CTCTTACTGAAACCGTCTCTTGTCAGTGCACCTCCCATGGAAGAAGGAGGACTTATATTA
TATCTCAGATTGCTAGCCGTGGCATATGAGAAGACACAGGAGCTTGCAAGAGATTTACGT
GGGGTAGGGTGTGGCGACTTGGATGTTGAAGGATTAACAGAATCTCTGTTTCTACCACAC
AAAGACATATACATCGAGTATGAGCAGGCCTCTCTTAGACAACTTTACAAAGCTAAGATG
GAGGAGCTGCGTACCGAAGGCCAGCAATCCTCTGAGTCATCTGGAACAATTGGACGCTCA
AAAGGTGCTTCAATGGCATCCTCTCACCAGCAAATTTCTGTCACTGTGGTGACAGAGTTT
GTGCGTTGGAATGAAGAAGCAGTATCCAGATGCACTTTGTTTTCATCACAGCCTGCTGCA
GTTGCTGCAAATGTAAGAGCTGTTTTTACATGCCTTCTAGATCAAGTTAGTATATACATA
ACTGAAGGTCTTGAAAGAGCCAGAGACAGCCTTACCGAGGCTGCTGCTTTGAGGGAAAGA
TTTGTGCTTGGAACTAGCGTTAGTCGAAGGGTAGCTGCTGCAGCTGCTTCTGCTGCAGAA
GCAGCAGCTGCGGCTGGTGAAAGCAGTTTCAGATCTTTCATGGTTGCTGTGCAACGTTGT
GGGAGCAGTGTGGCTATTGTGCAGCAATATTTCGCAAACTCTATATCTCGGCTTTTACTA
CCTGTGGATGGTGCGCATGCTGCTTCCTGTGAAGAAATGGCTACAGCTATGTCAAGTGCT
GAGGGTGCTGCTTATAAGGGGCTTCAGCAGTGCATTGAAACTGTTATGGCAGAGGTGGAA
CGCATACTTTCAACTGAACAAAAAGCCACAGATTATCGATCACCTGATGACGGCATTGCC
CCTGACCATCGGCCAACACAAGCTTGTTCAAAAGTTGTCGCATACCTTTCACGGGTGCTT
GAATCGGCATTCACAGCACTGGAAGGGCTTAACAAACAAGCTTTCCTGACTGAATTGGGG
AATCGTTTACACAAAGGCTTGCTTAATCATTGGCAAAAATTCACTTTTAATGCAAGTGGA
GGACTGCGTTTGAAGCGTGATATAACAGAGTATGGGGAGTTTGTTCGTAGTTTCAATGCC
CCTTCTGTTGATGAGAAATTTGAACAGCTGGGCATCATGGCAAATGTGTTTATTGTTGCT
CCAGAAAGTCTTTCCACACTGTTTGAGGGAACCCCGAGCATTAGGAAAGATGCACAAAGG
TTCATTCAGCTTCGGGAGGATTACAAGAGTGCAAAGCTTGCAGCGAGACTCAGCTCCTTA
TGGCCTAGCTCTAGTTAG

Peptide Sequence

PEP ID

XP_016509593.1
PEP Infomation

PREDICTED: exocyst complex component SEC10-like, partial [Nicotiana tabacum]
Sequence

THSTVVXPPTHTHTLTLSTNLILLLVNAACTVARPELENRLLARFDAASQKRELSTMREC
AKILSQFNRGTSAMQHYVGLCPMFDVEVMNADAELVLGDQGAQPSPSNVARGLSSIFKEI
TETVRKEAATIAAVFPSPNDVMSILVQRVLEDRVPKLLEKLLLKPSLVSAPPMEEGGLIL
YLRLLAVAYEKTQELARDLRGVGCGDLDVEGLTESLFLPHKDIYIEYEQASLRQLYKAKM
EELRTEGQQSSESSGTIGRSKGASMASSHQQISVTVVTEFVRWNEEAVSRCTLFSSQPAA
VAANVRAVFTCLLDQVSIYITEGLERARDSLTEAAALRERFVLGTSVSRRVAAAAASAAE
AAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMATAMSSA
EGAAYKGLQQCIETVMAEVERILSTEQKATDYRSPDDGIAPDHRPTQACSKVVAYLSRVL
ESAFTALEGLNKQAFLTELGNRLHKGLLNHWQKFTFNASGGLRLKRDITEYGEFVRSFNA
PSVDEKFEQLGIMANVFIVAPESLSTLFEGTPSIRKDAQRFIQLREDYKSAKLAARLSSL
WPSSS

Transcript Sequence

Gene sequence data has not been registered.